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Faculty and Staff Profiles

Ronald Koder

Associate Professor

School/Division

Division of Science

Department

Physics

Office

Marshak 315

p: 212-650-5583

p: 212-650-5502

f: 212-650-6940

e: koder@sci.ccny.cuny.edu

w: View my website >>

  • Profile

     




     


    • 2012-present Professor            The City College of New York Dept. of Physics
    • 2006-2012     Assistant Professor        The City College of New York Dept. of Physics
    • 2002-2004    Adjunct Professor        Swarthmore College Dept. of Chemistry    2000-2006    Postdoctoral Fellow        The University of Pennsylvania School of Medicine
    • 1992-1993    Research Chemist        Monsanto Corp., St. Louis, MO
  • Education

    B.S. The University of Missouri
    Ph.D. The Johns Hopkins University
    Post-Doctoral The University of Pennsylvania
  • Courses Taught

    Phys V3800G    Biophysics
    Phys42200G    Biophysics
    Phys31500M    Medical Physics


  • Research Interests

    experimental biological physics; de novo biomimetic design of proteins
    http://web.sci.ccny.cuny.edu/~koder/research.html


        Projects:
        Methods
        Artificial Blood
        Protein Chemotherapeutics
        Solar Energy

  • Publications

     

    Google Scholar

    Brisendine, J.M., Mutter, A.C., Cerda, J.F., Koder, R.L. A 3D Printed Cell for Rapid, Low Volume Spectroelectrochemistry. (2013) Anal. Biochem. In Press


    Brown, M.C., Mutter, A.C., Koder, R.L., JiJi, R.D., Cooley, J.W. Direct quantification of persistent α-helical content and discrete types of backbone disorder during a molten globule to ordered peptide transition. (2013) J. Raman Spect. In Press


    Zhang, L., Andersen, E.M.E., Khajo, A., Magliozzo, R.S., Koder, R.L. Dynamic Factors Affecting Gaseous Ligand Binding in an Artificial Oxygen Transport Protein. (2013) Biochemistry 52:447−455Braun P, Goldberg E, Negron C, von Jan M, Xu F, Nanda V, Koder RL, Noy D.
    "Design principles for chlorophyll-binding sites in helical proteins", Proteins, 2011 Feb;79(2):463-76. (2011). CCNY Authors assigned: Koder, R. L.
    Internal Publication ID: 2140
    Incorrect citation? Report it here
    Zhang L, Anderson JL, Ahmed I, Norman JA, Negron C, Mutter AC, Dutton PL, Koder RL Manipulating cofactor binding thermodynamics in an artificial oxygen transport protein., Biochemistry, 2011 Nov 29;50(47):10254-61. Epub 2011 Nov 8. PMID: 22004125 (2011). CCNY Authors assigned: Zhang, L.; Negron, C; Mutter, AC; Koder, RL
    Internal Publication ID: 2147
    Incorrect citation? Report it here
    Rodriguez-Granillo A, Annavarapu S, Zhang L, Koder RL, Nanda V. Computational design of thermostabilizing D-amino acid substitutions., J Am Chem Soc, 2011 Nov 23;133(46):18750-9. Epub 2011 Oct 27. PMID: 21978298 (2011). CCNY Authors assigned: Zhang, L; Koder, RL
    Internal Publication ID: 2148
    Incorrect citation? Report it here
    Cui D, Koder RL, Dutton PL, Miller AF. 15N solid-state NMR as a probe of flavin H-bonding., J Phys Chem B, 2011 Jun 23;115(24):7788-98. Epub 2011 May 27. (2011). CCNY Authors assigned: Koder, RL
    Internal Publication ID: 2149
    Incorrect citation? Report it here
    Xu, F., Zhang, L., Koder, R.L., Nanda, V. De Novo Self-Assembling Collagen Heterotrimers using Explicit Positive and Negative Design, Biochemistry, 49, 2307-2316 (2010). CCNY Authors assigned: Zhang, L., Koder, R.L.,
    Internal Publication ID: 1209
    Incorrect citation? Report it here
    Koder R.L. and Nanda, V. Designing enzymes, from intuition to computation, Nature Chemistry, 2, 15-24 (2010). CCNY Authors assigned: Koder R.L.
    Internal Publication ID: 1210
    Incorrect citation? Report it here
    Koder R.L.,Anderson, R.,Soloman, L.A., Reddy, K.S., Moser, C.M., Dutton, P.L. Engineering Artificial Protein Function, Nature, 458:305-309 (2009). CCNY Authors assigned: Koder R.L.
    Internal Publication ID: 1211
    Incorrect citation? Report it here
    Negron, C., Fufezan, C., Koder R.L. Geometric Constraints for Porphyrin Binding in Helical Protein Binding Sites, Prot. Struct. Func. Bioinform, 74:400-416 (2009). CCNY Authors assigned: Negron, C., Fufezan, C., Koder R.L.
    Internal Publication ID: 1212
    Incorrect citation? Report it here
    Lichtenstein, B.R., Cerda, J.F., Koder, R.L., Dutton, P.L. Reversible Proton Coupled Electron Transfer in a Peptide-incorporated Naphthoquinone Amino Acid, Chem. Comm, 2:168-170 (2009). CCNY Authors assigned: Koder, R.L
    Internal Publication ID: 1213
    Incorrect citation? Report it here
    Anderson, R., Moser, C.M., Koder, R.L., Dutton, P.L. Controlling complexity and water penetration in functional de novo protein design, Biochem. Soc. Trans., 36:1106-1111 (2008). CCNY Authors assigned: Koder, R.L.
    Internal Publication ID: 900
    Incorrect citation? Report it here
    Cerda, J.F., Koder, R.L., Lichtenstein, B.R., Moser, C.M., Miller, A.-F., Dutton, P.L. Hydrogen Bond- Free Flavin Redox Properties: Managing Flavins in Extreme Aprotic Solvents, Org. & Biomol. Chem., 6:2204-2212 (2008). CCNY Authors assigned: Koder, R.L.
    Internal Publication ID: 901
    Incorrect citation? Report it here
    Koder, R.L. Cofactor Oriented Protein Design, Hunter College Dept of Chemistry, Hunter College Dept of Chemistry (2008). CCNY Authors assigned: Koder, R.L.
    Internal Publication ID: 902
    Incorrect citation? Report it here
    Koder, R.L. Cofactor Oriented Protein Design, Cornell School of Medicine, Dept. of Biophysics (2008). CCNY Authors assigned: Koder, R.L.
    Internal Publication ID: 903
    Incorrect citation? Report it here
    Koder R.L., Lichtenstein B. R., Cerda J. F., Miller A. F., Dutton P. L. A Benzene Soluble Flavin Analogue, Tetrahedron Letters, 48, 517-520 (2007). CCNY Authors assigned: Koder
    Internal Publication ID: 190
    Incorrect citation? Report it here
    Koder, R. L., and Dutton, P. L. Looking Forward: The de novo Design of Proteins with Specific Function, Dalton Trans, in press (2006). CCNY Authors assigned: Koder
    Internal Publication ID: 530
    Incorrect citation? Report it here
    Koder, R. L., Walsh, J. D., Pometum, M. S., Dutton, P. L., Wittebort, R. J., and Miller, A. F. 15N Solid-state NMR provides a sensitive probe of oxidized flavin reactive sites., J. Amer. Chem. Soc., in press (2006). CCNY Authors assigned: Koder
    Internal Publication ID: 531
    Incorrect citation? Report it here
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