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Ronald Koder

Faculty and Staff Profiles

Ronald Koder

Associate Professor

School/Division
Department
Office
Marshak 315
Phone Number: 
212-650-5583
Secondary Phone: 
212-650-5502
Fax: 
212-650-6940
Email: 
koder@sci.ccny.cuny.edu
Personal Website: 
View my website >>
Heading: 
Profile
Description: 

 

   
   

 

  • 2012-present Professor            The City College of New York Dept. of Physics
  • 2006-2012     Assistant Professor        The City College of New York Dept. of Physics
  • 2002-2004    Adjunct Professor        Swarthmore College Dept. of Chemistry    2000-2006    Postdoctoral Fellow        The University of Pennsylvania School of Medicine
  • 1992-1993    Research Chemist        Monsanto Corp., St. Louis, MO
Heading: 
Education
Description: 

B.S. The University of Missouri
Ph.D. The Johns Hopkins University
Post-Doctoral The University of Pennsylvania

Heading: 
Courses Taught
Description: 

Phys V3800G    Biophysics
Phys42200G    Biophysics
Phys31500M    Medical Physics

Heading: 
Research Interests
Description: 

experimental biological physics; de novo biomimetic design of proteins
http://web.sci.ccny.cuny.edu/~koder/research.html

    Projects:
    Methods
    Artificial Blood
    Protein Chemotherapeutics
    Solar Energy

Heading: 
Publications
Description: 

Google Scholar

Brisendine, J.M., Mutter, A.C., Cerda, J.F., Koder, R.L. A 3D Printed Cell for Rapid, Low Volume Spectroelectrochemistry. (2013) Anal. Biochem. In Press

Brown, M.C., Mutter, A.C., Koder, R.L., JiJi, R.D., Cooley, J.W. Direct quantification of persistent α-helical content and discrete types of backbone disorder during a molten globule to ordered peptide transition. (2013) J. Raman Spect. In Press

Zhang, L., Andersen, E.M.E., Khajo, A., Magliozzo, R.S., Koder, R.L. Dynamic Factors Affecting Gaseous Ligand Binding in an Artificial Oxygen Transport Protein. (2013) Biochemistry 52:447−455Braun P, Goldberg E, Negron C, von Jan M, Xu F, Nanda V, Koder RL, Noy D. "Design principles for chlorophyll-binding sites in helical proteins", Proteins, 2011 Feb;79(2):463-76. (2011). CCNY Authors assigned: Koder, R. L.
Internal Publication ID: 2140
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Zhang L, Anderson JL, Ahmed I, Norman JA, Negron C, Mutter AC, Dutton PL, Koder RL Manipulating cofactor binding thermodynamics in an artificial oxygen transport protein., Biochemistry, 2011 Nov 29;50(47):10254-61. Epub 2011 Nov 8. PMID: 22004125 (2011). CCNY Authors assigned: Zhang, L.; Negron, C; Mutter, AC; Koder, RL
Internal Publication ID: 2147
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Rodriguez-Granillo A, Annavarapu S, Zhang L, Koder RL, Nanda V. Computational design of thermostabilizing D-amino acid substitutions., J Am Chem Soc, 2011 Nov 23;133(46):18750-9. Epub 2011 Oct 27. PMID: 21978298 (2011). CCNY Authors assigned: Zhang, L; Koder, RL
Internal Publication ID: 2148
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Cui D, Koder RL, Dutton PL, Miller AF. 15N solid-state NMR as a probe of flavin H-bonding., J Phys Chem B, 2011 Jun 23;115(24):7788-98. Epub 2011 May 27. (2011). CCNY Authors assigned: Koder, RL
Internal Publication ID: 2149
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Xu, F., Zhang, L., Koder, R.L., Nanda, V. De Novo Self-Assembling Collagen Heterotrimers using Explicit Positive and Negative Design, Biochemistry, 49, 2307-2316 (2010). CCNY Authors assigned: Zhang, L., Koder, R.L.,
Internal Publication ID: 1209
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Koder R.L. and Nanda, V. Designing enzymes, from intuition to computation, Nature Chemistry, 2, 15-24 (2010). CCNY Authors assigned: Koder R.L.
Internal Publication ID: 1210
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Koder R.L.,Anderson, R.,Soloman, L.A., Reddy, K.S., Moser, C.M., Dutton, P.L. Engineering Artificial Protein Function, Nature, 458:305-309 (2009). CCNY Authors assigned: Koder R.L.
Internal Publication ID: 1211
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Negron, C., Fufezan, C., Koder R.L. Geometric Constraints for Porphyrin Binding in Helical Protein Binding Sites, Prot. Struct. Func. Bioinform, 74:400-416 (2009). CCNY Authors assigned: Negron, C., Fufezan, C., Koder R.L.
Internal Publication ID: 1212
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Lichtenstein, B.R., Cerda, J.F., Koder, R.L., Dutton, P.L. Reversible Proton Coupled Electron Transfer in a Peptide-incorporated Naphthoquinone Amino Acid, Chem. Comm, 2:168-170 (2009). CCNY Authors assigned: Koder, R.L
Internal Publication ID: 1213
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Anderson, R., Moser, C.M., Koder, R.L., Dutton, P.L. Controlling complexity and water penetration in functional de novo protein design, Biochem. Soc. Trans., 36:1106-1111 (2008). CCNY Authors assigned: Koder, R.L.
Internal Publication ID: 900
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Cerda, J.F., Koder, R.L., Lichtenstein, B.R., Moser, C.M., Miller, A.-F., Dutton, P.L. Hydrogen Bond- Free Flavin Redox Properties: Managing Flavins in Extreme Aprotic Solvents, Org. & Biomol. Chem., 6:2204-2212 (2008). CCNY Authors assigned: Koder, R.L.
Internal Publication ID: 901
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Koder, R.L. Cofactor Oriented Protein Design, Hunter College Dept of Chemistry, Hunter College Dept of Chemistry (2008). CCNY Authors assigned: Koder, R.L.
Internal Publication ID: 902
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Koder, R.L. Cofactor Oriented Protein Design, Cornell School of Medicine, Dept. of Biophysics (2008). CCNY Authors assigned: Koder, R.L.
Internal Publication ID: 903
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Koder R.L., Lichtenstein B. R., Cerda J. F., Miller A. F., Dutton P. L. A Benzene Soluble Flavin Analogue, Tetrahedron Letters, 48, 517-520 (2007). CCNY Authors assigned: Koder
Internal Publication ID: 190
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Koder, R. L., and Dutton, P. L. Looking Forward: The de novo Design of Proteins with Specific Function, Dalton Trans, in press (2006). CCNY Authors assigned: Koder
Internal Publication ID: 530
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Koder, R. L., Walsh, J. D., Pometum, M. S., Dutton, P. L., Wittebort, R. J., and Miller, A. F. 15N Solid-state NMR provides a sensitive probe of oxidized flavin reactive sites., J. Amer. Chem. Soc., in press (2006). CCNY Authors assigned: Koder
Internal Publication ID: 531
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